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Running Parameters:
Tree File = rps8_adjusted_ultrametric.nwc
MSA File = rps8_mafft_aa.fas
Traits File = rps8_traits.fas
PDB ID = 5MMJ
Chain identifier = h
Query sequence name in MSA = Dendrobium_chrysotoxum
Job title: rps8_60orchids
Download parameters file to run TraitRateProp locally
TraitRateProp calculation is finished:
Chi-Sq Hypothesis Testing:
D statistic is: 59.3600, degrees of freedom: 2. P-Value is: 1.28870e-13, thus with significance level 0.05 the null hypothesis can be rejected.
An association between the phenotypic trait and the rate of sequence evolution was observed.
The proportion of sites in association with the trait is 0.69937.
The relative rate parameter is 7.60583.
TraitRateProp detailed results
MSA colored by Bayes factor
Consensus sequence of the MSA colored by Bayes factor
Per-site predictions
Projection on the 3D structure:
- View TraitRateProp results projected on the 3D structure
- RasMol script to color the 3D structure by TraitRateProp results
- Mapping of TraitRateProp results on the 3D structure
The ultrametric input tree colored by trait state (download in PDF format)
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